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Friday, July 9, 2010

Sub-Saharan African Paternal Admxiture in Caucasoids

Sub-Saharan African Paternal Admxiture in Caucasoids

Two recent papers [1, 2] are a first step to detecting Sub-Saharan African admixture in living Caucasoids.
According to [1] E-P2*, E-M2 and E-M33 are restricted to Sub-Saharan Africans and appear rarely elsewhere. According to [2], E(xE3b) is also restricted to Sub-Saharan Africans. The combined frequency of these haplogroups are (if more than one samples are available, they are both given):
12.7% Berber (north-central Morocco)
10.3% Palestinians
10% Mozabite Berbers
7.3% United Arab Emirates
6.8/1.3/0% in Arab (Morocco)
6.8% Saharawish (North Africa)
6.3% in Berber (Morocco)
5.8% Moyen Atlas Berbers
4.3% Turkish Cypriots
4% Northern Portuguese
3.6% Bedouins
3.4% Tunisian
3.4% Marrakesh Berbers
2.9% Albanians (Calabria, Italy)
2.9/0% Turks (Istanbul)
2.5% Berber (southern Morocco)
2% Southern Portuguese
1.6% Sardinians
1.3% Italian (Calabria)
0.9% Iraqi
0.6% Pakistani
Of course these numbers should be interpreted as evidence of existence of sub-Saharan admixture, not as a necessarily accurate quantification of its precise extent, which is however likely to be low in most populations.

[1] 000540.html
[2] 000531.html
http://dienekes.50webs.com/blog/archives/2004_04.html

Mediterranean Face (1)

Mediterranean Face

http://dienekes.50webs.com/blog/archives/2004_04.html

Italian actress Monica Bellucci is a nearly perfect example of the Mediterranean race.











ΕΓΩ ΠΑΡΑΤΗΡΩ ΜΙΑ ΜΥΤΗ 'ΜΑΚΕΔΟΝΙΚΟΥ ΤΥΠΟΥ' (ΚΥΡΤΗ ΠΡΟΣ ΤΑ ΕΣΩ)  ΚΑΙ ΜΙΑ ΛΕΠΤΟΠΡΟΣΩΠΙΑ ΜΕΓΑΛΥΤΕΡΑ ΤΟΥ  ΚΑΤΑ ΤΗΝ ΓΝΩΜΗΝ ΜΟΥ ΜΕΣΟΥ ΟΡΟΥ! ΟΠΩΣΔΗΠΟΤΕ ΜΕΣΟΓΕΙΑΚΗ, ΟΜΟΙΑ ΜΕ ΠΟΛΛΑ ΚΟΡΙΤΣΙΑ ΠΟΥ ΒΛΕΠΟΥΜΕ ΓΥΡΩ ΜΑΣ, ΑΛΛΑ ΔΕΝ ΘΑ ΤΗΝ ΕΛΕΓΑ  "ΙΔΕΩΔΕΣ ΠΑΡΑΔΕΙΓΜΑ"-ΤΟ  ΠΑΡΑΔΕΙΓΜΑ ΠΙΣΤΕΥΩ ΕΧΕΙ ΠΙΟ "ΓΕΜΑΤΟ" ΠΡΟΣΩΠΟ, ΙΣΧΥΡΟΤΕΡΑ ΟΣΤΑ ΚΑΙ ΟΧΙ ΤΗΝ "ΤΟΠΙΚΗ" ΡΙΝΑ ΤΗΣ ΠΕΡΙΟΧΗΣ ΤΗΣ ΒΟΡΕΙΟΥ ΜΑΚΕΔΟΝΙΑΣ (ΚΑΙ ΣΤΑ ΝΟΜΙΣΜΑΤΑ ΤΩΝ ΠΤΟΛΕΜΑΙΩΝ), ΑΛΛΑ ΕΛΑΦΡΟΤΑΤΑ ΚΥΡΤΗ ΠΡΟΣ ΤΑ ΕΞΩ. ΕΠΙΣΗΣ Η ΚΟΜΗ ΕΙΝΑΙ ΠΟΛΥ ΜΕΛΑΝΗ, ΤΟ ΠΑΡΑΔΕΙΓΜΑ ΠΙΣΤΕΥΩ ΕΙΝΑΙ ΚΑΣΤΑΝΟ.

Northeast Indian Population Genetics

Northeast Indian Population Genetics

Molecular Biology and Evolution
The Northeast Indian Passageway: A Barrier or Corridor for Human Migrations?
Richard Cordaux et al.
The northeast Indian passageway connecting the Indian subcontinent to east/southeast Asia is thought to have been a major corridor for human migrations. Because it is also an important linguistic contact zone, it is predicted that northeast India has witnessed extensive population interactions, thus leading to high genetic diversity within groups and heterogeneity among groups. To test this prediction, we analyzed 14 bi-allelic and 5 short tandem repeat Y-chromosome markers and hypervariable region 1 mtDNA sequence variation in 192 northeast Indians. We find that both northeast Indian Y-chromosomes and mtDNAs consistently show strikingly high homogeneity among groups and strong affinities to east Asian groups. We detect virtually no Y-chromosome and mtDNA admixture between northeast and other Indian groups. Northeast Indian groups are also characterized by a greatly reduced Y-chromosome diversity, which contrasts with extensive mtDNA diversity. This is best explained by a male founder effect during the colonization of northeast India that is estimated to have occurred within the last 4,000 years. Thus, contrary to the prediction, these results provide strong evidence for a genetic discontinuity between northeast Indian groups and other Indian groups. We therefore conclude that the northeast Indian passageway acted as a geographic barrier rather than as a corridor for human migrations between the Indian subcontinent and east/southeast Asia, at least within the last millennia and possibly for several tens of thousand years, as suggested by the overall distinctiveness of the Indian and east Asian Y-chromosome and mtDNA gene pools.
http://dienekes.50webs.com/blog/archives/2004_05.html

Extent of Germanic Admixture in Iberia and Italy

Extent of Germanic Admixture in Iberia and Italy

The recent study* on Y chromosome haplogroup I gives us the means to attempt a first-order quantification of the extent of Germanic admixture in parts of western Europe that were affected by the barbarian movements during and after the time of the western Roman empire's collapse.
Haplogroup I reaches high frequencies in the Germanic world, while its frequency in Italy and Iberia is low, making it an excellent candidate for this type of analysis. It is divided in three main clades:

  • I1a originated in Franco-Cantabria and spread to northwestern Europe after the Last Glacial Maximum. Its maximum frequency today is in Norwegians (38.9%) and is frequent in Scandinavia and Germany (25%)
  • I1b is divided into I1b2, frequent in Sardinia and Basque country, and undifferentiated I1b*, with a wide distribution and higher frequency, and a primary focus in the eastern Balkans (up to 40% in Bosnians). I1b* originated somewhere between the Adriatic and the Black Sea.
  • I1c is correlated with I1a and shares a common haplotype with it, indicating a shared history of the two. Maximum frequency of 12.5% in Germans.
It should be stressed here that I originated in southern Europe and spread northwards after the LGM. But, given that today two particular clades (I1a+I1c) are very frequent among Germans compared to southern Europeans, we can hypothesize that any movement of Germanic speakers would introduce such chromosomes to the affected population.
I1a is found in Portuguese (1.3%), Catalans (3.1%), northern Italians (2.6%), central Italians (2%), Calabrians (0.7%), Italians of Albanian origin (1.3%), Italians from Apulia (1.3%). These numbers are less than 1/10 of the corresponding frequency in Germanic speakers.
I1c is found in Portuguese (1.6%), northern Italians (1%), central Italians (3%), Calabrians (1.4%), Italians of Albanian origin (3.8%), which are similarly less than 1/10 of the corresponding frequency.
In general, it appears that the introgression of Germanic elements into the Iberian and Italian peninsulas has been minimal. In particular, for the case of Italy where an "invigorating" Germanic admixture has been proposed by Teutonists as a cause of the Rennaissance and the economic prosperity of northern Italy, we observe that no such influence is observed.
While movements of peoples did in fact occur, causing the collapse of the western Empire, it appears that on the whole these did not alter the pre-existing genetic composition of the indigenous populations.

* Am. J. Hum. Genet., 75:000, 2004
Phylogeography of Y-Chromosome Haplogroup I Reveals Distinct Domains of Prehistoric Gene Flow in Europe
Siiri Rootsi
To investigate which aspects of contemporary human Y-chromosome variation in Europe are characteristic of primary colonization, late-glacial expansions from refuge areas, Neolithic dispersals, or more recent events of gene flow, we have analyzed, in detail, haplogroup I (Hg I), the only major clade of the Y phylogeny that is widespread over Europe but virtually absent elsewhere. The analysis of 1,104 Hg I Y chromosomes, which were identified in the survey of 7,574 males from 60 population samples, revealed several subclades with distinct geographic distributions. Subclade I1a accounts for most of Hg I in Scandinavia, with a rapidly decreasing frequency toward both the East European Plain and the Atlantic fringe, but microsatellite diversity reveals that France could be the source region of the early spread of both I1a and the less common I1c. Also, I1b*, which extends from the eastern Adriatic to eastern Europe and declines noticeably toward the southern Balkans and abruptly toward the periphery of northern Italy, probably diffused after the Last Glacial Maximum from a homeland in eastern Europe or the Balkans. In contrast, I1b2 most likely arose in southern France/Iberia. Similarly to the other subclades, it underwent a postglacial expansion and marked the human colonization of Sardinia 9,000 years ago.

http://dienekes.50webs.com/blog/archives/2004_05.html

Directional migration in the Hindu castes

Directional migration in the Hindu castes

Human Genetics (to appear)
Directional migration in the Hindu castes: inferences from mitochondrial, autosomal and Y-chromosomal data
Stephen Wooding et al.
Abstract Genetic, ethnographic, and historical evidence suggests that the Hindu castes have been highly endogamous for several thousand years and that, when movement between castes does occur, it typically consists of females joining castes of higher social status. However, little is known about migration rates in these populations or the extent to which migration occurs between caste groups of low, middle, and high social status. To investigate these aspects of migration, we analyzed the largest collection of genetic markers collected to date in Hindu caste populations. These data included 45 newly typed autosomal short tandem repeat polymorphisms (STRPs), 411 bp of mitochondrial DNA sequence, and 43 Y-chromosomal single-nucleotide polymorphisms that were assayed in more than 200 individuals of known caste status sampled in Andrah Pradesh, in South India. Application of recently developed likelihood-based analyses to this dataset enabled us to obtain genetically derived estimates of intercaste migration rates. STRPs indicated migration rates of 1–2% per generation between high-, middle-, and low-status caste groups. We also found support for the hypothesis that rates of gene flow differ between maternally and paternally inherited genes. Migration rates were substantially higher in maternally than in paternally inherited markers. In addition, while prevailing patterns of migration involved movement between castes of similar rank, paternally inherited markers in the low-status castes were most likely to move into high-status castes. Our findings support earlier evidence that the caste system has been a significant, long-term source of population structuring in South Indian Hindu populations, and that patterns of migration differ between males and females.
http://dienekes.50webs.com/blog/archives/2004_07.html

1,900-year-old Caucasoids in China

1,900-year-old Caucasoids in China

XINING, July 6 (Xinhuanet) -- Archeologists confirmed that the human skeletons discovered this May in northwest China's Qinghai Province belonged to three Europeans who lived in China over 1,900 years ago.
"The physical characteristics of the bones showed it is a typical European race," said Wang Minghui, an expert with the archeological institute under the Chinese Academy of Social Sciences.
The skeletons were spotted at Zhongchuan Town of the province's eastern most Minhe Hui and Tu Autonomous County.
Since 2002, archeologists have unearthed nine tombs of Han Dynasty (206 BC-220 AD) at a construction site of a brickfield in the town, but it was not until this May that they felt the skeletons in two tombs "very special", said Ren Xiaoyan, deputy director if the provincial archeological institute, who added they invited Wang, who specializes in human bone identification, to take part in the study on the findings.
Qinghai is on the southern section of the world-known land trade corridor -- the Silk Road, linking China with Central and Western Asia and to the eastern shores of the Mediterranean begins in the country's northwest and runs 7,000 kilometers.
Serving as an important bridge for the economic and cultural exchanges between the East and the West, the area, which the Silk Road covered in China, used to see throngs of Indian, Persian, Arabic, Greek and Roman people.
Ren said the tomb shape, the burial articles and the way they were put in the tomb are all typical in Eastern Han Dynasty (25-220), which proved the three westerners had lived here for a long time and were accustomed to local traditions and customs.
"Although so far, we have been not sure of the country the three Europeans came from and there might be a large number of such 'westerners' living here at the ancient time," said Ren.
Such European skeletons have only been revealed in northwest China's Xinjiang Uygur Autonomous Region, a neighboring region which is to the northwest of Qinghai, so the discovery this time is of great importance for the study of the ancient society in Qinghai, said Wang.
http://dienekes.50webs.com/blog/archives/2004_07.html

Non-Caucasoid chromosomes in Ashkenazi Jews

Non-Caucasoid Y chromosomes in Ashkenazi Jews

According to the [1], Ashkenazi Jews have the following non-Caucasoid Y-haplogroups.
3 E*(xE3b) African
1 N Asian
23 Q Asian
Total: 27 out of 442 (6.1%)
[1] Hum Genet (2004) 114 : 354–365

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Non-Caucasoid Y chromosomes in Ashkenazi Levites

According to the [1], Ashkenazi Levites have the following non-Caucasoid Y-haplogroups.
1 DE(xE3) uncertain
1 N*(xN3) Asian
1 Q Asian
Total: 3 out of 60 (5%)
[1] Am. J. Hum. Genet., 73:768-779, 2003

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Non-Caucasoid mtDNA admixture in Ashkenazi Jews

According to the supplementary data of [1], Ashkenazi Jews have the following non-Caucasoid mtDNA haplogroups.
1 A (0.2%) Asian
4 M* (0.7%) Asian
6 M1 (1.1%) Asian or E. African
10 L2a (1.8%) African
Total: 21 (3.7%)
[1] Eur J Hum Genet 12(5): 355-364